Index

_

__getitem__() (posebutcher.butcher.CyclicList method) _build_fragment_bolus() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _cast_ray() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _classify_atom() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _classify_position() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _classify_vector() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _clip_pockets() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _get_protein_atom() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _guess_vector_direction() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

_new_pocket() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _num_heavy_atoms_from_distance() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _output_to_color_pairs() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _parse_fragments() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _parse_pockets() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _parse_protein() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _render_meshes() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) _spherical_pocket_from_atoms() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

A

arrow() (in module posebutcher.o3d)

B

BASE_COLOR (in module posebutcher.butcher)

boolean_difference() (in module posebutcher.vtk)

C

C_VDW_RADIUS (in module posebutcher.butcher) cavity() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) CC_DIST (in module posebutcher.butcher) chop() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) circular_samples() (in module posebutcher.butcher)

combine_many() (in module posebutcher.o3d) compute_vertex_normals() (in module posebutcher.o3d) cone() (in module posebutcher.o3d) convex_hull() (in module posebutcher.o3d) create_arrow_mesh() (in module posebutcher.butcher) CyclicList (class in posebutcher.butcher) cylinder() (in module posebutcher.o3d)

D

dict (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property)

dump_mesh() (in module posebutcher.o3d)

E

explore() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

F

fragment_atomgroup (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property) FRAGMENT_COLOR (in module posebutcher.butcher) fragment_mesh (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property)

from_directory() (posebutcher.butcher.PoseButcher class method) (posebutcher.PoseButcher class method) from_open3d() (in module posebutcher.vtk)

G

glass() (in module posebutcher.o3d)

I

is_point_in_mesh() (in module posebutcher.o3d)

L

load_mesh() (in module posebutcher.o3d) logger (in module posebutcher.butcher) (in module posebutcher.o3d) (in module posebutcher.vtk)

M

material() (in module posebutcher.o3d) material_from_dict() (in module posebutcher.o3d) material_to_dict() (in module posebutcher.o3d) mesh_fix() (in module posebutcher.o3d) mesh_from_AtomGroup() (in module posebutcher.o3d)

mesh_from_pdb() (in module posebutcher.o3d) module posebutcher posebutcher.butcher posebutcher.o3d posebutcher.vtk

O

output_to_label() (in module posebutcher.butcher)

P

paint() (in module posebutcher.o3d) POCKET_COLORS (in module posebutcher.butcher) pocket_meshes (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property) pockets (posebutcher.butcher.PoseButcher property), [1] (posebutcher.PoseButcher property), [1] posebutcher module PoseButcher (class in posebutcher) (class in posebutcher.butcher) posebutcher.butcher module

posebutcher.o3d module posebutcher.vtk module protein (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property) PROTEIN_COLOR (in module posebutcher.butcher) protein_hull (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property) protein_mesh (posebutcher.butcher.PoseButcher property) (posebutcher.PoseButcher property)

R

read_ply() (in module posebutcher.vtk) render() (in module posebutcher.o3d) (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

rotation_matrix_from_vectors() (in module posebutcher.o3d)

S

score() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) signed_distance() (in module posebutcher.o3d) SOLVENT_COLOR (in module posebutcher.butcher)

sphere() (in module posebutcher.o3d) subtract_atoms() (in module posebutcher.o3d) summarise_output() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

T

tag() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method) tensor_from_legacy() (in module posebutcher.o3d) test_2spheres() (in module posebutcher.o3d)

test_3spheres() (in module posebutcher.o3d) test_sphere() (in module posebutcher.o3d) to_open3d() (in module posebutcher.vtk) trim() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

U

union() (in module posebutcher.o3d)

union_mesh_from_atoms() (in module posebutcher.o3d)

W

write() (posebutcher.butcher.PoseButcher method) (posebutcher.PoseButcher method)

write_ply() (in module posebutcher.vtk)